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INTERNATIONAL CONFERENCE ON
COMPUTATIONAL METHODS IN SYSTEMS BIOLOGY
18 and 19 October 2006
The Microsoft Research - University of Trento
Centre for Computational and Systems Biology
TRENTO - ITALY
http://www.msr-unitn.unitn.it/events/cmsb06.php
The CMSB (Computational Methods in Systems Biology) conference series was established in 2003 to help catalyze the convergence of modellers, physicists, mathematicians, and theoretical computer scientists from fields such as language design, concurrency theory, program verification, and molecular biologists, physicians, neuroscientists interested in a systems-level understanding of cellular physiology and pathology.
CMSB'06 solicits original research articles (including significant works-in-progress), surveys of current research and posters. These may cover theoretical or applied contributions that are motivated by a biological question and can demonstrate either actual or potential usefulness towards answering that question. They may also cover models of computation inspired by biological processes; the motivation may be as much computational as biological. Particularly relevant case studies and open issues from the biological side that demands modeling of systems are of interest as well. The introduction of formal models should be supported by theoretical arguments about the model and/or on the analyses that they enable, by comparisons with other network models, and/or by examples of representation and analysis of a biological system.
Topics of interest include:
1. Biological systems and networks: inference, properties, modeling, dynamics, simulation and reverse engineering
2. Formal methods for drug discovery and design
3. Methods to predict biological network behavior from incomplete information
4. Models including symbolic evolution and learning
5. Models of Self-assembly
6. Detailed case-studies on how a biological question was successfully addressed using formal models
7. Emergence of properties in complex biological systems
8. Theoretical comparisons between different formal models of cellular processes
9. Differential, discrete and/or stochastic modeling-language frameworks
10. Quantitative formal languages
11. Biologically-inspired extensions to concurrency theory, constraint programming, logical methods or language equivalences
12. Computer models in nano-sciences applied to biological domains
13. Definition and study of theoretical properties of biologically-inspired formal languages
14. Biological data bases and exchange formats for biological data and standards
History
2003 held in Trento, chaired by Corrado Priami
2004 held in Paris, co-chaired by Vincent Danos and Vincent Schachter
2005 held in Edinburgh, chaired by Gordon Plotkin.
Paper and poster submission guidelines
Authors are invited to submit original research papers or survey papers of no more than 15 pages in .pdf format using the LNCS templates, available at the url below
http://www.springer.com/sgw/cda/frontpage/0,11855,5-164-2-72376-0,00.html
We also accept poster proposals in the form of a text-only abstract describing the poster contents.
Papers and posters descriptions should be sent by e-mail to
cmsb06@msr-unitn.unitn.it.
The subject line should be CMSB Paper: (Title of Paper).
The body of the e-mail should contain the title, authors and affiliations, an abstract, and the themes to which the paper/poster refers according to the topics of interest list. If no theme is listed, please insert some keywords.
All submissions will be reviewed by the program committee. Accepted papers will be included in the proceedings available at the conference. Publication as an LNBI volume by Springer is under negotiation.
Important Dates (deadlines are strict):
Submission of papers: May, 10
Notification of paper acceptance: June, 10
Revised version of papers due: June, 30
Submission of posters: July, 10
Notification of poster acceptance: July, 30
Venue
The conference will be held in Trento (Italy) at the premises of the newly established Microsoft Research - University of Trento Centre for Computational and Systems Biology. The dates are 18 - 19 October 2006.
Steering Committee
Finn Drablos, Norwegian University of Science and Technology, Trondheim (NO)
Monika Heiner, TU Cottbus (D)
Patrick Lincoln, Stanford Research International (US)
Satoru Miyano, University of Tokyo (JP)
Corrado Priami, University of Trento (IT)
Magali Roux-Rouquié, CNRS-UPMC (FR)
Vincent Schachter, Genoscope, Evry (FR)
Adelinde Uhrmacher, University of Rostock (D)
Program Committee
Program Committee Chair
Corrado Priami - The Microsoft Research - University of Trento Centre for
Computational and Systems Biology - (I)
Charles Auffray, CNRS (F)
Muffy Calder, University of Glasgow (UK)
Luca Cardelli, Microsoft Research Cambridge (UK)
Diego Di Bernardo, Telethon Institute of Genetics and Medicine (IT)
David Harel, Weizmann Institute (Israel)
Monika Heiner, University of Cottbus (D)
Ela Hunt, University of Zürich (CH)
François Kepes, CNRS / Epigenomics Program, Evry (F)
Marta Kwiatkowska, University of Birmingham (UK)
Cosimo Laneve, University of Bologna (IT)
Eduardo Mendoza, LMU (D) and University of the Philippines-Diliman (PH)
Bud Mishra, New York University (US)
Satoru Miyano, University of Tokyo (JP)
Christos Ouzounis, European Bioinformatics Institute (UK)
Gordon Plotkin, University of Edinburgh (UK)
Alessandro Quattrone, University of Florence (IT)
Magali Roux-Rouquié, CNRS-UPMC (F)
David Searls, Senior Vice-President, Worldwide Bioinformatics - GlaxoSmithKline (US)
Adelinde Uhrmacher, University of Rostock (D)
Alfonso Valencia, Centro Nacional de Biotecnologia-CSIC (ES)
Organizing Committee
Matteo Cavaliere and Elisabetta Nones - The Microsoft Research - University of Trento Centre for Computational and Systems Biology (IT)
Events and Meetings Office of the University of Trento (IT)
The Microsoft Research - University of Trento Centre for Computational and Systems Biology
P.zza Manci, 17 - 38050 Povo, Italy
tel: +39 0461/882811
fax: +39 0461/882814
email: cmsb06@msr-unitn.unitn.it
web: http://www.msr-unitn.unitn.it/
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