Dear Subrata,
This is a typical error message you get when trying to submit from a CLAIX-2016 frontend node. Could you try to submit the job from a CLAIX-2018 frontend node (login18-1, login18-2, …)?
Kind regards,
Simon
From: Subrata Pramanik subrata.biocell@gmail.com Sent: Thursday, April 25, 2019 10:04 AM To: claix18-slurm-pilot@lists.rwth-aachen.de Subject: [claix18-slurm-pilot] Re: #BSUB -P abcd4321
Dear All,
I am using Gromacs with following script:
#!/usr/bin/env zsh
#SBATCH -p c18m
#SBATCH --account=jara0187
#SBATCH -J Subrata1
#SBATCH -o GROMACSJOB.o%J
#SBATCH -e GROMACSJOB.e%J
#SBATCH --mail-user=s.pramanik@biotec.rwth-aachen.de mailto:s.pramanik@biotec.rwth-aachen.de
#SBATCH --mail-type=BEGIN
#SBATCH --mail-type=end
#SBATCH -n 24
#SBATCH --mem-per-cpu=5000
#SBATCH -t 24:00:00
###### end of Slurm directives ######
###### start of shell commands ######
### load the necessary module files
module load CHEMISTRY
module load gromacs/5.1.2
#path for job file
cd $HOME/run1-test
# Start the MPI-parallel mdrun directly ...
$SLURM_NTASKS gmx_mpi mdrun -deffnm md_0_1 -cpi md_0_1.cpt -append
I am getting this error:
sbatch: error: s_p_parse_file: unable to status file /etc/slurm/slurm.conf: No such file or directory, retrying in 1sec up to 60sec
sbatch: error: ClusterName needs to be specified
sbatch: fatal: Unable to process configuration file
If anybody has any suggestions, please let me know.
Thanks in advance.
Best regards,
Subrata
On Thu, Apr 25, 2019 at 9:57 AM Julien Guénolé <guenole@imm.rwth-aachen.de mailto:guenole@imm.rwth-aachen.de > wrote:
Thanks to answer to the list: it can always be helpful to others...
If you get an error with these,
#SBATCH -p c18m #SBATCH --account=jara0187
I don't know what to suggest more.
Best wishes, Julien
On 25/04/2019 09:20, Subrata Pramanik wrote:
Dear Julien,
Thank you for your suggestion.
In the LSF, I had this way:
##BSUB -P rwth0031
#BSUB -P jara0187
In the SLURM, I changed in these ways:
#SBATCH -p c18m
#SBATCH --account=jara0187
OR
#SBATCH -p rwth0031
#SBATCH --account=jara0187
In both cases, I am getting the same error:
sbatch: error: s_p_parse_file: unable to status file /etc/slurm/slurm.conf: No such file or directory, retrying in 1sec up to 60sec
sbatch: error: ClusterName needs to be specified
sbatch: fatal: Unable to process configuration file
I am herewith sending the script file. If possible, please have a look and suggest me.
Thanks in advance.
Best regards,
Subrata.
On Wed, Apr 24, 2019 at 5:36 PM Julien Guénolé <guenole@imm.rwth-aachen.de mailto:guenole@imm.rwth-aachen.de > wrote:
As indicated by the error message, did you try to specify the ClusterName? For example:
#SBATCH -p c18m
if there is still an error, a copy of the batch file could be useful!
Best wishes, Julien
On 24/04/2019 17:27, Subrata Pramanik wrote:
Hi all,
I am trying to submit a job to Gromacs using cluster.
With LSF, it was working well.
I am getting the follwong error:
sbatch: error: s_p_parse_file: unable to status file /etc/slurm/slurm.conf: No such file or directory, retrying in 1sec up to 60sec
sbatch: error: ClusterName needs to be specified
sbatch: fatal: Unable to process configuration file
Please suggest me to solve this problem.
Thanks in advance.
Best regards,
Subrata.
On Tue, Mar 12, 2019 at 8:20 PM Philipp Rüßmann <p.ruessmann@fz-juelich.de mailto:p.ruessmann@fz-juelich.de > wrote:
Dear Marek,
the command is #SBATCH --account=abcd1234.
Cheers, Philipp
Am 12.03.19 um 20:01 schrieb simon@isf.rwth-aachen.de mailto:simon@isf.rwth-aachen.de :
Hi all,
Is there an equivalent of the #BSUB -p command in SLURM as well?
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