Dear All,

I am getting problem with SLURM job submission. like this:


job_submission_slurmupdated.sh: line 44: module: command not found
job_submission_slurmupdated.sh: line 45: module: command not found

These lines have two  modules:

module load CHEMISTRY
module load gromacs/2019

These are already sourced in .zshrc file and GROMACS is also working.

This is the beginning of script also: 

#!/usr/local_rwth/bin/zsh

#SBATCH -p c18m

If anybody has any clue/idea to overcome this, please suggest me.

Thanks in advance.
Best regards,
Subrata.  

 

On Wed, Aug 28, 2019 at 1:50 PM Krishna Murthy, Karthik Ravi <ravi.krishna@rwth-aachen.de> wrote:

Dear All, In the past (LSF) it was possible to submit parallel jobs on several cores for ABAQUS. However, now with SLURM i encounter the problem stated below: Abaqus Error: The number of cpus used is more than the total number of processors specified by the host list. mp_host_list: [['ncm0081.hpc.itc.rwth-aachen.de', 1]]. Abaqus/Analysis exited with error(s). I suspect it is due to a fautly setting of the enviromental variable $R_WLM_ABAQUSHOSTLIST, as the job submission script, found on the RWTH documentation website states: cat << EOF > $abaqus_v6.env #verbose = 3 #ask_delete = OFF mp_file_system = (SHARED, LOCAL) mp_host_list = $R_WLM_ABAQUSHOSTLIST EOF It seems like currently there is only one host in that list, which i suspect to be insufficient when running on, let say 16 cores. Best Regards, Karthik

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