Dear Subrata, This is a typical error message you get when trying to submit from a CLAIX-2016 frontend node. Could you try to submit the job from a CLAIX-2018 frontend node (login18-1, login18-2, …)? Kind regards, Simon From: Subrata Pramanik <subrata.biocell@gmail.com> Sent: Thursday, April 25, 2019 10:04 AM To: claix18-slurm-pilot@lists.rwth-aachen.de Subject: [claix18-slurm-pilot] Re: #BSUB -P abcd4321 Dear All, I am using Gromacs with following script: #!/usr/bin/env zsh #SBATCH -p c18m #SBATCH --account=jara0187 #SBATCH -J Subrata1 #SBATCH -o GROMACSJOB.o%J #SBATCH -e GROMACSJOB.e%J #SBATCH --mail-user=s.pramanik@biotec.rwth-aachen.de <mailto:s.pramanik@biotec.rwth-aachen.de> #SBATCH --mail-type=BEGIN #SBATCH --mail-type=end #SBATCH -n 24 #SBATCH --mem-per-cpu=5000 #SBATCH -t 24:00:00 ###### end of Slurm directives ###### ###### start of shell commands ###### ### load the necessary module files module load CHEMISTRY module load gromacs/5.1.2 #path for job file cd $HOME/run1-test # Start the MPI-parallel mdrun directly ... $SLURM_NTASKS gmx_mpi mdrun -deffnm md_0_1 -cpi md_0_1.cpt -append I am getting this error: sbatch: error: s_p_parse_file: unable to status file /etc/slurm/slurm.conf: No such file or directory, retrying in 1sec up to 60sec sbatch: error: ClusterName needs to be specified sbatch: fatal: Unable to process configuration file If anybody has any suggestions, please let me know. Thanks in advance. Best regards, Subrata On Thu, Apr 25, 2019 at 9:57 AM Julien Guénolé <guenole@imm.rwth-aachen.de <mailto:guenole@imm.rwth-aachen.de> > wrote: Thanks to answer to the list: it can always be helpful to others... If you get an error with these, #SBATCH -p c18m #SBATCH --account=jara0187 I don't know what to suggest more. Best wishes, Julien On 25/04/2019 09:20, Subrata Pramanik wrote: Dear Julien, Thank you for your suggestion. In the LSF, I had this way: ##BSUB -P rwth0031 #BSUB -P jara0187 In the SLURM, I changed in these ways: #SBATCH -p c18m #SBATCH --account=jara0187 OR #SBATCH -p rwth0031 #SBATCH --account=jara0187 In both cases, I am getting the same error: sbatch: error: s_p_parse_file: unable to status file /etc/slurm/slurm.conf: No such file or directory, retrying in 1sec up to 60sec sbatch: error: ClusterName needs to be specified sbatch: fatal: Unable to process configuration file I am herewith sending the script file. If possible, please have a look and suggest me. Thanks in advance. Best regards, Subrata. On Wed, Apr 24, 2019 at 5:36 PM Julien Guénolé <guenole@imm.rwth-aachen.de <mailto:guenole@imm.rwth-aachen.de> > wrote: As indicated by the error message, did you try to specify the ClusterName? For example: #SBATCH -p c18m if there is still an error, a copy of the batch file could be useful! Best wishes, Julien On 24/04/2019 17:27, Subrata Pramanik wrote: Hi all, I am trying to submit a job to Gromacs using cluster. With LSF, it was working well. I am getting the follwong error: sbatch: error: s_p_parse_file: unable to status file /etc/slurm/slurm.conf: No such file or directory, retrying in 1sec up to 60sec sbatch: error: ClusterName needs to be specified sbatch: fatal: Unable to process configuration file Please suggest me to solve this problem. Thanks in advance. Best regards, Subrata. On Tue, Mar 12, 2019 at 8:20 PM Philipp Rüßmann <p.ruessmann@fz-juelich.de <mailto:p.ruessmann@fz-juelich.de> > wrote: Dear Marek, the command is #SBATCH --account=abcd1234. Cheers, Philipp Am 12.03.19 um 20:01 schrieb simon@isf.rwth-aachen.de <mailto:simon@isf.rwth-aachen.de> :
Hi all,
Is there an equivalent of the #BSUB -p command in SLURM as well?
Best Wishes, Marek _______________________________________________ claix18-slurm-pilot mailing list -- claix18-slurm-pilot@lists.rwth-aachen.de <mailto:claix18-slurm-pilot@lists.rwth-aachen.de> To unsubscribe send an email to claix18-slurm-pilot-leave@lists.rwth-aachen.de <mailto:claix18-slurm-pilot-leave@lists.rwth-aachen.de>
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