Hi Subrata, from which login node do you submit your job script? Could you please check with the command `hostname`? I assume you are using one of the old login nodes. If this is the case, try again on one of the claix 18 login nodes, e.g. login18-1.hpc.itc.rwth-aachen.de Cheers, Sebastian Am 25.04.2019 um 10:04 schrieb Subrata Pramanik:
Dear All,
I am using Gromacs with following script:
#!/usr/bin/env zsh
#SBATCH -p c18m #SBATCH --account=jara0187 #SBATCH -J Subrata1 #SBATCH -o GROMACSJOB.o%J #SBATCH -e GROMACSJOB.e%J #SBATCH --mail-user=s.pramanik@biotec.rwth-aachen.de <mailto:s.pramanik@biotec.rwth-aachen.de> #SBATCH --mail-type=BEGIN #SBATCH --mail-type=end #SBATCH -n 24 #SBATCH --mem-per-cpu=5000 #SBATCH -t 24:00:00 ###### end of Slurm directives ######
###### start of shell commands ######
### load the necessary module files module load CHEMISTRY module load gromacs/5.1.2
#path for job file
cd $HOME/run1-test
# Start the MPI-parallel mdrun directly ...
$SLURM_NTASKS gmx_mpi mdrun -deffnm md_0_1 -cpi md_0_1.cpt -append
I am getting this error: sbatch: error: s_p_parse_file: unable to status file /etc/slurm/slurm.conf: No such file or directory, retrying in 1sec up to 60sec sbatch: error: ClusterName needs to be specified sbatch: fatal: Unable to process configuration file
If anybody has any suggestions, please let me know.
Thanks in advance.
Best regards, Subrata
On Thu, Apr 25, 2019 at 9:57 AM Julien Guénolé <guenole@imm.rwth-aachen.de <mailto:guenole@imm.rwth-aachen.de>> wrote:
Thanks to answer to the list: it can always be helpful to others...
If you get an error with these,
#SBATCH -p c18m #SBATCH --account=jara0187
I don't know what to suggest more.
Best wishes, Julien
On 25/04/2019 09:20, Subrata Pramanik wrote:
Dear Julien,
Thank you for your suggestion.
In the LSF, I had this way:
##BSUB -P rwth0031 #BSUB -P jara0187
In the SLURM, I changed in these ways:
#SBATCH -p c18m #SBATCH --account=jara0187
OR
#SBATCH -p rwth0031 #SBATCH --account=jara0187
In both cases, I am getting the same error: sbatch: error: s_p_parse_file: unable to status file /etc/slurm/slurm.conf: No such file or directory, retrying in 1sec up to 60sec sbatch: error: ClusterName needs to be specified sbatch: fatal: Unable to process configuration file
I am herewith sending the script file. If possible, please have a look and suggest me.
Thanks in advance.
Best regards, Subrata.
On Wed, Apr 24, 2019 at 5:36 PM Julien Guénolé <guenole@imm.rwth-aachen.de <mailto:guenole@imm.rwth-aachen.de>> wrote:
As indicated by the error message, did you try to specify the ClusterName? For example:
#SBATCH -p c18m
if there is still an error, a copy of the batch file could be useful!
Best wishes, Julien
On 24/04/2019 17:27, Subrata Pramanik wrote:
Hi all,
I am trying to submit a job to Gromacs using cluster.
With LSF, it was working well.
I am getting the follwong error:
sbatch: error: s_p_parse_file: unable to status file /etc/slurm/slurm.conf: No such file or directory, retrying in 1sec up to 60sec sbatch: error: ClusterName needs to be specified sbatch: fatal: Unable to process configuration file
Please suggest me to solve this problem.
Thanks in advance.
Best regards, Subrata.
On Tue, Mar 12, 2019 at 8:20 PM Philipp Rüßmann <p.ruessmann@fz-juelich.de <mailto:p.ruessmann@fz-juelich.de>> wrote:
Dear Marek,
the command is #SBATCH --account=abcd1234.
Cheers, Philipp
Am 12.03.19 um 20:01 schrieb simon@isf.rwth-aachen.de <mailto:simon@isf.rwth-aachen.de>: > Hi all, > > Is there an equivalent of the #BSUB -p command in SLURM as well? > > Best Wishes, > Marek > _______________________________________________ > claix18-slurm-pilot mailing list -- claix18-slurm-pilot@lists.rwth-aachen.de <mailto:claix18-slurm-pilot@lists.rwth-aachen.de> > To unsubscribe send an email to claix18-slurm-pilot-leave@lists.rwth-aachen.de <mailto:claix18-slurm-pilot-leave@lists.rwth-aachen.de>
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-- Yours Sincerely,
Subrata Pramanik
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-- Yours Sincerely,
Subrata Pramanik
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-- Yours Sincerely,
Subrata Pramanik
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